Luigi Puglielli, MD, PhD
Position title: Professor, Department of Medicine
MD, PhD, Catholic University of Rome (Italy)
Contact Information
D4247 VAH 2500
Overlook Terrace
Madison, WI 53719
608.280.7000
Email: lp1@medicine.wisc.edu
Puglielli Lab
Waisman Address:
1500 Highland Ave
Room 621
Madison, WI 53705
Research Statement
Our broad research interests are focused on molecular mechanisms of neurodevelopment and neurodegeneration. Our laboratory employs a combination of biochemical, cellular, molecular, and genetic approaches in in vitro, ex vivo and in vivo models. In 2007 we reported that nascent proteins could undergo Nε-lysine acetylation in the lumen of the endoplasmic reticulum (ER). This discovery resulted in the identification of a previously unknown biochemical machinery that impacts on the biology of the ER.
We now know that the ER acetylation machinery regulates two essential functions of the ER: (i) efficiency of the secretory pathway (as part of quality control) and (ii) disposal of toxic protein aggregates that form within the secretory pathway (through autophagy). We also know that the flux of acetyl-CoA into the ER regulates cross-talk between different intracellular compartments.
A dysfunctional ER acetylation machinery has been linked to developmental delay and premature death, autism spectrum disorder and intellectual disability, autosomal dominant spastic paraplegia-42, and Alzheimer’s disease. Our laboratory has generated mouse models that mimic the above diseases and dissected relevant pathogenic pathways. Our results support findings obtained from human-based studies and indicate that the ER acetylation machinery plays a crucial role in both neurodevelopmental and neurodegenerative diseases.
Active projects include:
1) Dissection of biochemical and molecular pathways that link the ER acetylation machinery to neurodevelopmental and neurodegenerative diseases. Our group identified the ER acetylation machinery and showed its fundamental role in physiology and pathology. We are now expanding these studies to clearly understand what “goes wrong” in associated human diseases. New relevant mouse models are being generated to extend our findings. Our overall goal is to identify targets for possible therapeutic intervention.
2) Identification of the biochemical and molecular mechanisms that maintain cross-talk between different intracellular compartments. One fundamental aspect of cell biology is that the different intracellular compartments are able to talk to each other and maintain homeostasis. We now know that the intracellular flux of acetyl-CoA allows cross-talk between ER, cytosol, mitochondria, and nucleus. This “signaling function” of acetyl-CoA appears to be crucial for different forms of neurodevelopmental disorders (including autism spectrum disorder and intellectual disability, spastic paraplegia, neuronal hypoplasia and developmental delay, and epileptic encephalopathy) and neurodegenerative disorders (including Alzheimer’s disease and other forms of age-associated dementias). Therefore, it is imperative to identify the key players that regulate this intracellular cross-talk. This will help us dissect specific pathogenic mechanisms and identify potential therapeutic targets.
3) Molecular mechanisms of cognitive loss during aging and Alzheimer’s disease neuropathology. We have identified a novel link between aging and Alzheimer’s disease, which, when hyperactive, results in synaptic and cognitive deficits, and in severe degeneration of memory-forming and -retrieving areas of the brain. The molecular mechanisms involved in these events are being actively sought.
4) Drug discovery for the prevention and cure of neurodevelopmental and neurodegenerative disorders associated with dysfunctional ER acetylation. As mentioned above, the intracellular flux of acetyl-CoA and the ER acetylation machinery maintain the homeostatic balance of important cellular functions. This balance appears to be disrupted in specific neurodevelopmental and neurodegenerative disorders. We have identified compounds that under certain conditions are able to reestablish the balance and correct associated deficits. Mechanisms of action as well as therapeutic potential are being actively studied.
Selected Publications
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Zhu, Z., Xu, S., Wang, Z., Delafield, D. G., Rigby, M. J., Lu, G., Gu, T. J., Liu, P. K., Ma, M., Puglielli, L., & Li, L. (2023). CHRISTMAS: Chiral Pair Isobaric Labeling Strategy for Multiplexed Absolute Quantitation of Enantiomeric Amino Acids. Analytical chemistry, 95(50), 18504–18513. https://doi.org/10.1021/acs.analchem.3c03847
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Souder, D. C., McGregor, E. R., Rhoads, T. W., Clark, J. P., Porter, T. J., Eliceiri, K., Moore, D. L., Puglielli, L., & Anderson, R. M. (2023). Mitochondrial regulator PGC-1a in neuronal metabolism and brain aging. bioRxiv : the preprint server for biology, 2023.09.29.559526. https://doi.org/10.1101/2023.09.29.559526
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Fernandez-Fuente, G., Overmyer, K. A., Lawton, A. J., Kasza, I., Shapiro, S. L., Gallego-Muñoz, P., Coon, J. J., Denu, J. M., Alexander, C. M., & Puglielli, L. (2023). The citrate transporters SLC13A5 and SLC25A1 elicit different metabolic responses and phenotypes in the mouse. Communications biology, 6(1), 926. https://doi.org/10.1038/s42003-023-05311-1
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Zhang, H., Liu, Y., Fields, L., Shi, X., Huang, P., Lu, H., Schneider, A. J., Tang, X., Puglielli, L., Welham, N. V., & Li, L. (2023). Single-cell lipidomics enabled by dual-polarity ionization and ion mobility-mass spectrometry imaging. Nature communications, 14(1), 5185. https://doi.org/10.1038/s41467-023-40512-6
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Rigby, M. J., Orefice, N. S., Lawton, A. J., Ma, M., Shapiro, S. L., Yi, S. Y., Dieterich, I. A., Frelka, A., Miles, H. N., Pearce, R. A., Yu, J., Li, L., Denu, J. M., & Puglielli, L. (2022). Increased expression of SLC25A1/CIC causes an autistic-like phenotype with altered neuron morphology. Brain : a journal of neurology, 145(2), 500–516. https://doi.org/10.1093/brain/awab295
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Murie, M., Peng, Y., Rigby, M. J., Dieterich, I. A., Farrugia, M. A., Endresen, A., Bhattacharyya, A., & Puglielli, L. (2022). ATase inhibition rescues age-associated proteotoxicity of the secretory pathway. Communications biology, 5(1), 173. https://doi.org/10.1038/s42003-022-03118-0
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Rigby, M. J., Orefice, N. S., Lawton, A. J., Ma, M., Shapiro, S. L., Yi, S. Y., Dieterich, I. A., Frelka, A., Miles, H. N., Pearce, R. A., Yu, J., Li, L., Denu, J. M., & Puglielli, L. (2022). SLC13A5/sodium-citrate co-transporter overexpression causes disrupted white matter integrity and an autistic-like phenotype. Brain communications, 4(1), fcac002. https://doi.org/10.1093/braincomms/fcac002
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Rigby, M. J., Lawton, A. J., Kaur, G., Banduseela, V. C., Kamm, W. E., Lakkaraju, A., Denu, J. M., & Puglielli, L. (2021). Endoplasmic reticulum acetyltransferases Atase1 and Atase2 differentially regulate reticulophagy, macroautophagy and cellular acetyl-CoA metabolism. Communications biology, 4(1), 454. https://doi.org/10.1038/s42003-021-01992-8
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Sheehan, B. K., Orefice, N. S., Peng, Y., Shapiro, S. L., & Puglielli, L. (2021). ATG9A regulates proteostasis through reticulophagy receptors FAM134B and SEC62 and folding chaperones CALR and HSPB1. iScience, 24(4), 102315. https://doi.org/10.1016/j.isci.2021.102315
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Dieterich, I. A., Cui, Y., Braun, M. M., Lawton, A. J., Robinson, N. H., Peotter, J. L., Yu, Q., Casler, J. C., Glick, B. S., Audhya, A., Denu, J. M., Li, L., & Puglielli, L. (2021). Acetyl-CoA flux from the cytosol to the ER regulates engagement and quality of the secretory pathway. Scientific reports, 11(1), 2013. https://doi.org/10.1038/s41598-021-81447-6
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Rigby, M. J., Ding, Y., Farrugia, M. A., Feig, M., Cortese, G. P., Mitchell, H., Burger, C., & Puglielli, L. (2020). The endoplasmic reticulum acetyltransferases ATase1/NAT8B and ATase2/NAT8 are differentially regulated to adjust engagement of the secretory pathway. Journal of neurochemistry, 154(4), 404–423. https://doi.org/10.1111/jnc.14958
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Rigby, M. J., Gomez, T. M., & Puglielli, L. (2020). Glial Cell-Axonal Growth Cone Interactions in Neurodevelopment and Regeneration. Frontiers in neuroscience, 14, 203. https://doi.org/10.3389/fnins.2020.00203
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Chellappa K, Brinkman JA, Mukherjee S, Morrison M, Alotaibi MI, Carbajal KA, Alhadeff AL, Perron IJ, Yao R, Purdy CS, DeFelice DM, Wakai MH, Tomasiewicz J, Lin A, Meyer E, Peng Y, Arriola Apelo SI, Puglielli L, Betley JN, Paschos GK, Baur JA, Lamming DW. (2019). Hypothalamic mTORC2 is essential for metabolic health and longevity. Aging Cell, 18(5):e13014. doi: 10.1111/acel.13014.
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Dieterich IA, Lawton AJ, Peng Y, Yu Q, Rhoads TW, Overmyer KA, Cui Y, Armstrong EA, Howell PR, Burhans MS, Li L, Denu JM, Coon JJ, Anderson RM, Puglielli L. (2019). Acetyl-CoA flux regulates the proteome and acetyl-proteome to maintain intracellular metabolic crosstalk. Nature Communications, 10(1):3929. doi: 10.1038/s41467-019-11945-9.
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Peng Y, Kim MJ, Hullinger R, O’Riordan KJ, Burger C, Pehar M, Puglielli L. (2016) Improved proteostasis in the secretory pathway rescues Alzheimer’s disease in the mouse. Brain. 139(Pt 3):937-52. doi: 10.1093/brain/awv385.
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Hullinger R, Li M, Wang J, Peng Y, Dowell JA, Bomba-Warczak E, Mitchell HA, Burger C, Chapman ER, Denu JM, Li L, Puglielli L. (2016) Increased expression of AT-1/SLC33A1 causes an autistic-like phenotype in mice by affecting dendritic branching and spine formation. The Journal of Experimental Medicine. 27;213(7):1267-84. doi: 10.1084/jem.20151776.
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Peng Y, Puglielli L. (2016) Nϵ-lysine acetylation in the lumen of the endoplasmic reticulum: A way to regulate autophagy and maintain protein homeostasis in the secretory pathway. Autophagy. 2;12(6):1051-2. doi: 10.1080/15548627.2016.1164369.
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Li M, Pehar M, Liu Y, Bhattacharyya A, Zhang SC, O’Riordan KJ, Burger C, D’Adamio L, Puglielli L. (2015) The amyloid precursor protein (APP) intracellular domain regulates translation of p44, a short isoform of p53, through an IRES-dependent mechanism. Neurobiology of Aging. 36(10):2725-36. doi: 10.1016/j.neurobiolaging.
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Mielke MM, Haughey NJ, Bandaru VV, Zetterberg H, Blennow K, Andreasson U, Johnson SC, Gleason CE, Blazel HM, Puglielli L, Sager MA, Asthana S, Carlsson CM. (2014) Cerebrospinal fluid sphingolipids, β-amyloid, and tau in adults at risk for Alzheimer’s disease. Neurobiology of Aging. 35(11):2486-94. doi: 10.1016/j.neurobiolaging.2014.05.019.
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Ding Y, Dellisanti CD, Ko MH, Czajkowski C, Puglielli L. (2014) The endoplasmic reticulum-based acetyltransferases, ATase1 and ATase2, associate with the oligosaccharyltransferase to acetylate correctly folded polypeptides. The Journal of Biological Chemistry. 14;289(46):32044-55. doi: 10.1074/jbc.M114.585547.
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Mak AB, Pehar M, Nixon AM, Williams RA, Uetrecht AC, Puglielli L, Moffat J. (2014) Post-translational regulation of CD133 by ATase1/ATase2-mediated lysine acetylation. Journal of Molecular Biology. 29;426(11):2175-82. doi: 10.1016/j.jmb.2014.02.012.
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Pehar M, Ko MH, Li M, Scrable H, Puglielli L. (2014) P44, the ‘longevity-assurance’ isoform of P53, regulates tau phosphorylation and is activated in an age-dependent fashion. Aging Cell. 13(3):449-56. doi: 10.1111/acel.12192.
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Peng Y, Li M, Clarkson BD, Pehar M, Lao PJ, Hillmer AT, Barnhart TE, Christian BT, Mitchell HA, Bendlin BB, Sandor M, Puglielli L. (2014) Deficient import of acetyl-CoA into the ER lumen causes neurodegeneration and propensity to infections, inflammation, and cancer. Journal of Neuroscience. 14;34(20):6772-89. doi: 10.1523/JNEUROSCI.0077-14.2014.
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Sridharan A, Pehar M, Salamat MS, Pugh TD, Bendlin BB, Willette AA, Anderson RM, Kemnitz JW, Colman RJ, Weindruch RH, Puglielli L, Johnson SC. (2013) Calorie restriction attenuates astrogliosis but not amyloid plaque load in aged rhesus macaques: a preliminary quantitative imaging study. Brain Research. May 1;1508:1-8.
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Pehar M, Lehnus M, Karst A, Puglielli L. (2012) Proteomic assessment shows that many endoplasmic reticulum (ER)-resident proteins are targeted by N(epsilon)-lysine acetylation in the lumen of the organelle and predicts broad biological impact. The Journal of Biological Chemistry. 29;287(27):22436-40. doi: 10.1074/jbc.C112.362871.
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Pehar M, Jonas MC, Hare TM, Puglielli L. (2012) SLC33A1/AT-1 protein regulates the induction of autophagy downstream of IRE1/XBP1 pathway. The Journal of Biological Chemistry. 24;287(35):29921-30. doi: 10.1074/jbc.M112.363911.
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Ding Y, Ko MH, Pehar M, Kotch F, Peters NR, Luo Y, Salamat SM, Puglielli L. (2012) Biochemical inhibition of the acetyltransferases ATase1 and ATase2 reduces β-secretase (BACE1) levels and Aβ generation. The Journal of Biological Chemistry. 9;287(11):8424-33. doi: 10.1074/jbc.M111.310136.
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Pehar M, O’Riordan KJ, Burns-Cusato M, Andrzejewski ME, del Alcazar CG, Burger C, Scrable H, Puglielli L. (2010) Altered longevity-assurance activity of p53:p44 in the mouse causes memory loss, neurodegeneration and premature death. Aging Cell. 9(2):174-90. doi: 10.1111/j.1474-9726.2010.00547.x.
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Jonas MC, Pehar M, Puglielli L. (2010) AT-1 is the ER membrane acetyl-CoA transporter and is essential for cell viability. Journal of Cell Science. 1;123(Pt 19):3378-88. doi: 10.1242/jcs.068841.
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Jonas MC, Costantini C, Puglielli L. (2009) PCSK9 is required for the disposal of non-acetylated intermediates of the nascent membrane protein BACE1. EMBO Reports. 9(9):916-22. doi: 10.1038/embor.2008.132.
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Ko MH, Puglielli L. (2009) Two endoplasmic reticulum (ER)/ER Golgi intermediate compartment-based lysine acetyltransferases post-translationally regulate BACE1 levels. The Journal of Biological Chemistry. 23;284(4):2482-92. doi: 10.1074/jbc.M804901200.
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Ko MH, Puglielli L. (2007) The sterol carrier protein SCP-x/pro-SCP-2 gene has transcriptional activity and regulates the Alzheimer disease gamma-secretase. The Journal of Biological Chemistry. 6;282(27):19742-52.
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Costantini C, Scrable H, Puglielli L. (2006) An aging pathway controls the TrkA to p75NTR receptor switch and amyloid beta-peptide generation. The EMBO Journal. 3;25(9):1997-2006.
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Costantini C, Weindruch R, Della Valle G, Puglielli L. (2005) A TrkA-to-p75NTR molecular switch activates amyloid beta-peptide generation during aging. Biochemical Journal. 1;391(Pt 1):59-67.